PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g037210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 534aa    MW: 57626.9 Da    PI: 5.9088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g037210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11348390754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N+++  Lr+++Pk      +K++ a+iL  A++Y+k+L
  Sopen03g037210.1 348 MAERRRRKKLNDRLYMLRSVVPKI-----TKMDRASILGDAIKYLKEL 390
                       79*********************7.....7****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.599341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16344417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-9347390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-12348394No hitNo description
Gene3DG3DSA:4.10.280.109.5E-15348408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.20E-5462522No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MIIGVNDMGW IDGKEDGGTG SWVNQNNENH QQNNGGFPNE NHQLNNGGFS NFQAMVDDGG  60
VEWFMGGGDS DNHHINNNNN NGGGGGGSNM QSHISYSTSF TEAENSLLLQ PIDSSASCSP  120
VSGNVFNNID PSQVNFFMPQ KSTIPSSLTG LSNNPMDNSF NLGMLNQAGN GMMNTGYHHL  180
GSPNQMGTNN LSSYTQFSSP NLLQLPQVAG GYSSMGFGAN NSANGNTLFL NRSRTHKPLD  240
NFASIGAQPT LFQKRIAKNL VSNGENLGTE IGQSSSNPTD RKRKSSMTDE FEDVSMDGTL  300
NYDSDEFMDI SNKMEDGIKI GDSSNAASTV SGADQKGKKK GPPAKNLMAE RRRRKKLNDR  360
LYMLRSVVPK ITKMDRASIL GDAIKYLKEL LHDINELHNE LESTPANNSS LSPATSFHPL  420
TPTASALPSR IKEELVPSPL SSPTGQPARI EVRVREGRAV NIHMICSRKP GVLLSTMKAL  480
DSLGLDIQQA VISCFNGFVL DVFRAEQSNE GQDMHPDQIK AVLMETAGFQ GGAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337355KKKGPPAKNLMAERRRRKK
2349356ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134330.0BT013433.1 Lycopersicon esculentum clone 132073R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070765.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_015070766.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-118ICE1_ARATH; Transcription factor ICE1
TrEMBLK4BLY20.0K4BLY2_SOLLC; Uncharacterized protein
STRINGSolyc03g118310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-119bHLH family protein